Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process. A range of models of molecular evolution are implemented including the general reversible model. State frequencies and other parameters of the model may be given and site-specific rate heterogeneity may also be incorporated in a number of ways. Any number of trees may be read in and the program will produce any number of data sets for each tree. Thus large sets of replicate simulations can be easily created. It has been designed to be a general purpose simulator that incorporates most of the commonly used (and computationally tractable) models of molecular sequence evolution. I will show you how to install seq-gen on Ubuntu 22.04 in this guide.
- Operating system: Ubuntu 22.04 or older Ubuntu versions
- Privileges: Ascertain that you are able to execute sudo commands.
Install seq-gen Ubuntu 22.04
seq-gen is one of the popular ways on Ubuntu now so that this tutorial will show you some ways to install it. Choose the one that you think is easy and you can follow.
Install seq-gen using APT
This is one of the popular ways to install any Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these instructions to install seq-gen on your Ubuntu.
Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Obtain new packages from Ubuntu by updating the APT database. Launch the terminal and enter the following Linux command:
Step 2: Start installing the packages on Ubuntu 22.04. You can now install seq-gen Ubuntu by executing this command in the terminal.
Install seq-gen using Aptitude
You must run this command to install Aptitude if you haven’t already done so on Ubuntu.
After installing it, you can now install seq-gen, just following these steps:
Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Obtain new packages from Ubuntu by updating the APT database. Opening the terminal and executing the following Linux command:
Step 2: Install the package on Ubuntu 22.04. After updating the system, you can now install seq-gen Ubuntu by pasting this command into the terminal and pressing
Uninstall seq-gen on Ubuntu 22.04
Have you ever thought that uninstalling an application from Ubuntu might be challenging? You’re wrong; any program, not just a seq-gen, can be easily uninstalled by anyone.
If you installed seq-gen using APT or Aptitude, you could uninstall seq-gen on Ubuntu by following this step:
If you want to uninstall seq-gen and delete its data and dependencies, you can also run the following command:
In this guide, I showed you ways to install seq-gen on Ubuntu 22.04 and ways to uninstall seq-gen too. Please do not hesitate to contact me if you require assistance. I’m delighted to respond.