HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM (Sequence Alignment/Map) and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data. In this guide, I will show you how to install libhtsjdk-java on Ubuntu 22.04.
- OS: Ubuntu 22.04 or older versions with more than 2GB RAM
- Privileges: Make sure you are able to execute sudo commands.
Install libhtsjdk-java Ubuntu 22.04
libhtsjdk-java is one of the popular ways on Ubuntu now so that this tutorial will show you some ways to install it. Choose the one that you think is easy and you can follow.
Install libhtsjdk-java using APT
This is a popular method for installing Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these instructions to get libhtsjdk-java on your Ubuntu.
Step 1: The APT package repository cache needs to be updated before you try to install, update, or remove any packages. Update the APT database to fetch new packages from Ubuntu. Launching the terminal and entering the following Linux command:
Step 2: Start the package installation on Ubuntu 22.04. After updating, you can install libhtsjdk-java Ubuntu by pasting this command into the terminal and pressing
Install libhtsjdk-java using Aptitude
If you haven’t already installed Aptitude on Ubuntu, run this command to do so.
After installing aptitude, you can now install libhtsjdk-java by following these steps:
Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Update the APT database to fetch new packages from Ubuntu. Opening the terminal and executing this Linux command:
Step 2: Start installing the packages on Ubuntu 22.04. After updating the system, you can install libhtsjdk-java Ubuntu by executing this command in the terminal.
Uninstall libhtsjdk-java on Ubuntu 22.04
Have you ever considered how challenging it might be to uninstall an application from Ubuntu? You’re wrong, anyone can easily uninstall any program, not just a libhtsjdk-java.
You can uninstall libhtsjdk-java on Ubuntu by running this command if you installed it using APT or Aptitude.
If you want to uninstall libhtsjdk-java and delete its data and dependencies, you can also run the following command:
In this guide, I showed you ways to install libhtsjdk-java on Ubuntu 22.04 and ways to uninstall libhtsjdk-java too. Please contact me if you require any assistance. I’d be delighted to respond.