How to Install or Uninstall igv Ubuntu 22.04

Updated: September 4, 2022

The Integrative Genomics Viewer (IGV) is a high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of IGV is its focus on the integrative nature of genomic studies, with support for both array-based and next-generation sequencing data, and the integration of clinical and phenotypic data. Although IGV is often used to view genomic data from public sources, its primary emphasis is to support researchers who wish to visualize and explore their own data sets or those from colleagues. To that end, IGV supports flexible loading of local and remote data sets, and is optimized to provide high-performance data visualization and exploration on standard desktop systems. I will show you how to install igv on Ubuntu 22.04 in this tutorial.

Prerequisites to install

  • Operating system: Ubuntu 22.04 is needed for igv to work
  • Privileges: Verify that you can execute the sudo commands line.

Prerequisites to install igv on Ubuntu 22.04

Install igv Ubuntu 22.04

igv is one of the popular ways on Ubuntu now so that this tutorial will show you some ways to install it. Choose the one that you think is easy and you can follow.

Install igv using APT

This is one of the most popular methods for installing Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these steps to get igv on your Ubuntu 22.04.

Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Update the APT database to download new packages from Ubuntu. Opening the terminal and executing the following Linux command:

sudo apt update

Step 2: Install the package on Ubuntu 22.04. After updating, you can install igv Ubuntu by pasting this command into the terminal and pressing Enter.

sudo apt-get -y install igv

Install igv using Aptitude

Aptitude allows users to view a list of available packages and manage package installation, upgrade, and removal. If you haven’t already installed it on Ubuntu, run this command to do so.

sudo apt -y install aptitude

After that, you can now install igv, just following these steps:

Step 1: Update the APT database to download new packages from Ubuntu. Opening the terminal and executing this Linux command:

sudo apt-get -y update

Step 2: Install the package on Ubuntu 22.04. After updating the system, you can install igv Ubuntu by executing this command in the terminal.

sudo aptitude -y install igv

Uninstall igv on Ubuntu 22.04

Have you ever thought that uninstalling an application from Ubuntu is difficult? You are mistaken; Anyone can easily uninstall any program, not just igv.

This command can be used to uninstall igv from Ubuntu 22.04 if it was installed using APT or Aptitude.

sudo apt remove --auto-remove igv

To uninstall igv and remove its data and dependencies, you can also use the following command:

sudo apt autoremove --purge igv

Conclusion

In this guide, I showed you ways to install igv on Ubuntu 22.04 and ways to uninstall igv too. Please do not hesitate to contact me if you require assistance. I’m delighted to respond.