Ways to Install or Uninstall cd-hit on Ubuntu 22.04

Updated: October 24, 2022

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information. In this guide, I will show you ways to install cd-hit Ubuntu 22.04.

Software Requirement

  • Operating system: Ubuntu 22.04 or older Ubuntu versions
  • Privileges: Ensure that you are able to execute the sudo commands line.

Prerequisites to install cd-hit on Ubuntu 22.04

Install cd-hit Ubuntu 22.04

cd-hit is one of the popular ways on Ubuntu now so that this tutorial will show you how to install it in various ways. Choose the one that you think is easy and you can follow.

Install cd-hit using APT

This is one of the popular ways to install any Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these steps to get cd-hit on your Ubuntu 22.04.

Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Update the APT database to download new packages from Ubuntu. Opening the terminal and executing the following Linux command:

sudo apt update

Step 2: Install the package on Ubuntu 22.04. After updating, you can install cd-hit Ubuntu by pasting this command into the terminal and pressing Enter.

sudo apt-get install cd-hit

Install cd-hit using Aptitude

If you haven’t already installed Aptitude on Ubuntu, run this command to do so.

sudo apt install aptitude

After that, you can now install cd-hit, just following these steps:

Step 1: Update the APT database to fetch new packages from Ubuntu. Opening the terminal and executing the following Linux command:

sudo apt-get update

Step 2: Start the package installation on Ubuntu 22.04. After updating the system, you can install cd-hit Ubuntu by executing this command in the terminal.

sudo aptitude -y install cd-hit

Uninstall cd-hit on Ubuntu 22.04

Have you ever thought that uninstalling an application from Ubuntu might be challenging? You’re wrong; any program, not just a cd-hit, can be easily uninstalled by anyone.

This command can be used to uninstall cd-hit from Ubuntu 22.04 if it was installed using APT or Aptitude.

sudo apt remove --auto-remove cd-hit

To uninstall cd-hit and remove its data and dependencies, you can also use the following command:

sudo apt autoremove --purge cd-hit

Summary

In this guide, I showed you ways to install cd-hit on Ubuntu 22.04 and some ways to uninstall cd-hit too. Please do not hesitate to contact me if you require assistance. I’m delighted to respond.