The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences of interest to existing genomes or sequence collections. The comparisons are conducted using BLAST, and the BLAST results are presented in the form of graphical maps that can also show sequence features, gene and protein names, COG category assignments, and sequence composition characteristics. CCT can generate maps in a variety of sizes, including 400 Megapixel maps suitable for posters. Comparisons can be conducted within a particular species or genus, or all available genomes can be used. The entire map creation process, from downloading sequences to redrawing zoomed maps, can be completed easily using scripts included with the CCT. User-defined features or analysis results can be included on maps, and maps can be extensively customized. To simplify program setup, a CCT virtual machine that includes all dependencies preinstalled is available. Detailed tutorials illustrating the use of CCT are included with the CCT documentation. In this guide, I will show you how to install cct-examples on Ubuntu 22.04.
- OS: Ubuntu 22.04 is needed for cct-examples to work
- Privileges: Ascertain that you are able to execute sudo commands.
Install cct-examples Ubuntu 22.04
cct-examples is one of the popular ways on Ubuntu now so that this tutorial will show you some ways to install it. Choose the one that you think is easy and you can follow.
Install cct-examples using APT
This is a popular method for installing Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these steps to install cct-examples on your Ubuntu.
Step 1: The APT package repository cache needs to be updated before you try to install, update, or remove any packages. Update the APT database to fetch new packages from Ubuntu. Launch the terminal and enter the following Linux command:
Step 2: Start installing the packages on Ubuntu 22.04. You can now install cct-examples Ubuntu by executing this command in the terminal.
Install cct-examples using Aptitude
Users can manage their installation, upgrade, and removal of packages with Aptitude and view a list of the packages that are currently available. If you haven’t already installed it on Ubuntu, run this command to do so.
After installing, you can now install cct-examples, just following these steps:
Step 1: The APT package repository cache needs to be updated before you try to install, update, or remove any packages. Update the APT database to download new packages from Ubuntu. Opening the terminal and executing this Linux command:
Step 2: Install the package on Ubuntu 22.04. After updating, you can install cct-examples Ubuntu by pasting this command into the terminal and pressing
Uninstall cct-examples on Ubuntu 22.04
Have you ever considered how difficult it is to uninstall an application from Ubuntu? You are mistaken; anyone, not just package administrators, can easily uninstall any program.
If you installed cct-examples using APT or Aptitude, you could uninstall cct-examples on Ubuntu by executing this command
If you want to uninstall cct-examples and remove its data and dependencies, you can also run the following command:
In this tutorial, I showed you ways to install cct-examples on Ubuntu 22.04 and ways to uninstall cct-examples too. If you need any help, don’t hesitate to contact me. I’m very glad to answer them.