Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately. In this guide, I will show you how to install cat-bat on Ubuntu 22.04.
Prerequisites to install
- OS: cat-bat needs Ubuntu 22.04 to work
- Privileges: Make sure that you can run the sudo commands line.
Install cat-bat Ubuntu 22.04
cat-bat is one of the popular ways on Ubuntu now so that this tutorial will show you how to install it in various ways. Choose the one you believe is simple and easy to follow.
Install cat-bat using APT
This is a popular method for installing Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these steps to install cat-bat on your Ubuntu 22.04.
Step 1: Update the APT database to download new packages from Ubuntu. Opening the terminal and executing the following Linux command:
Step 2: Install the package on Ubuntu 22.04. After updating the system, you can install cat-bat Ubuntu by executing this command in the terminal.
Install cat-bat using Aptitude
If you didn’t install Aptitude on Ubuntu, you need to install it by executing this command.
Then, you can now install cat-bat, just following these steps:
Step 1: The APT package repository cache needs to be updated before you try to install, update, or remove any packages. Update the APT database to download new packages from Ubuntu. Opening the terminal and executing the following Linux command:
Step 2: Start installing the packages on Ubuntu 22.04. You can now install cat-bat Ubuntu by executing this command in the terminal.
Uninstall cat-bat on Ubuntu 22.04
Have you ever considered how challenging it might be to uninstall an application from Ubuntu? You’re wrong, anyone can easily uninstall any program, not just a cat-bat.
This command can be used to uninstall cat-bat from Ubuntu 22.04 if it was installed using APT or Aptitude.
You can also execute this command if you want to uninstall cat-bat and remove its data and dependencies:
In this tutorial, I showed you ways to install cat-bat on Ubuntu 22.04 and ways to uninstall cat-bat too. Please do not hesitate to contact me if you require assistance. I’m delighted to respond.