BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts. In this guide, I will show you ways to install bitseq Ubuntu 22.04.
Prerequisites to install
- Operating system: Ubuntu 22.04 or older Ubuntu versions
- Privileges: Ascertain that you are able to execute sudo commands.
Install bitseq Ubuntu 22.04
bitseq is one of the popular ways on Ubuntu now so that this tutorial will show you some ways to install it. Choose the one you believe is simple and easy to follow.
Install bitseq using APT
This is one of the popular ways to install any Ubuntu packages because it is simple to understand, even if you are a Linux novice. Following these instructions to get bitseq on your Ubuntu 22.04.
Step 1: Update the APT database to download new packages from Ubuntu. Launch the terminal and enter the following Linux command:
Step 2: Start the package installation on Ubuntu 22.04. You can now install bitseq Ubuntu by executing this command in the terminal.
Install bitseq using Aptitude
With Aptitude, users can view a list of available packages and manage their installation, upgrade, and removal of packages. If you didn’t install it on Ubuntu, you need to install it by executing this command.
Then, you can now install bitseq, just following these steps:
Step 1: The APT package repository cache needs to be updated before you try to install, update, or remove any packages. Obtain new packages from Ubuntu by updating the APT database. Launching the terminal and entering the following Linux command:
Step 2: Start the package installation on Ubuntu 22.04. After updating, you can install bitseq Ubuntu by pasting this command into the terminal and pressing
Uninstall bitseq on Ubuntu 22.04
Have you ever thought that uninstalling an application from Ubuntu is difficult? You are mistaken; Anyone can easily uninstall any program, not just bitseq.
You can uninstall bitseq Ubuntu by running this command if you installed it using APT or Aptitude.
You can also execute this command if you want to uninstall bitseq and remove its data and dependencies:
In this tutorial, I showed you ways to install bitseq on Ubuntu 22.04 and some ways to uninstall bitseq too. If you need any help, don’t hesitate to contact me. I’m very glad to answer them.