Ways to Install or Uninstall art-nextgen-simulation-tools on Ubuntu 22.04

Updated: October 24, 2022

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina’s Solexa, Roche’s 454 and Applied Biosystems’ SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods. In this tutorial, I will show you ways to install art-nextgen-simulation-tools Ubuntu 22.04.

Requirements

  • OS: art-nextgen-simulation-tools needs Ubuntu 22.04 to work
  • Privileges: Verify that you can execute the sudo commands line.

Prerequisites to install art-nextgen-simulation-tools on Ubuntu 22.04

Install art-nextgen-simulation-tools Ubuntu 22.04

art-nextgen-simulation-tools is one of the popular ways on Ubuntu now so that this tutorial will show you how to install it in various ways. Choose the one that you think is easy and you can follow.

Install art-nextgen-simulation-tools using APT

This is a popular method for installing any Ubuntu packages because it’s easy to follow, even if you are a newbie in Linux. Following these steps to install art-nextgen-simulation-tools on your Ubuntu.

Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Update the APT database to fetch new packages from Ubuntu. Launching the terminal and entering the following Linux command:

sudo apt update

Step 2: Start installing the packages on Ubuntu 22.04. After updating the system, you can install art-nextgen-simulation-tools Ubuntu by executing this command in the terminal.

sudo apt install art-nextgen-simulation-tools

Install art-nextgen-simulation-tools using Aptitude

If you didn’t install Aptitude on Ubuntu, you need to install it by executing this command.

sudo apt-get install aptitude

After that, you can now install art-nextgen-simulation-tools by following these steps:

Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Update the APT database to fetch new packages from Ubuntu. Opening the terminal and executing this Linux command:

sudo apt-get update

Step 2: Install the package on Ubuntu 22.04. After updating, you can install art-nextgen-simulation-tools Ubuntu by pasting this command into the terminal and pressing Enter.

sudo aptitude -y install art-nextgen-simulation-tools

Uninstall art-nextgen-simulation-tools on Ubuntu 22.04

Have you ever thought about how difficult it is to uninstall an application from Ubuntu? You are mistaken; anyone can easily uninstall any program, not just a package.

You can uninstall art-nextgen-simulation-tools Ubuntu by running this command if you installed it using APT or Aptitude.

sudo apt remove --auto-remove art-nextgen-simulation-tools

You can also execute this command if you want to uninstall art-nextgen-simulation-tools and remove its data and dependencies:

sudo apt autoremove --purge art-nextgen-simulation-tools

Ending

In this tutorial, I showed you ways to install art-nextgen-simulation-tools on Ubuntu 22.04 and some ways to uninstall art-nextgen-simulation-tools too. Please do not hesitate to contact me if you require assistance. I’m delighted to respond.