How to Install and Uninstall art-nextgen-simulation-tools on Ubuntu 22.04

Updated: September 1, 2022

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina’s Solexa, Roche’s 454 and Applied Biosystems’ SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods. I will show you how to install art-nextgen-simulation-tools on Ubuntu 22.04 in this guide.

Requirements to install

  • OS: Ubuntu 22.04 is needed for art-nextgen-simulation-tools to work
  • Privileges: Make sure that you can run the sudo commands line.

Prerequisites to install art-nextgen-simulation-tools on Ubuntu 22.04

Install art-nextgen-simulation-tools Ubuntu 22.04

art-nextgen-simulation-tools is one of the popular ways on Ubuntu now so that this tutorial will show you some ways to install it. Choose the one that you think is easy and you can follow.

Install art-nextgen-simulation-tools using APT

This is one of the popular ways to install any Ubuntu packages because it is simple to understand, even if you are a Linux novice. Following these instructions to get art-nextgen-simulation-tools on your Ubuntu.

Step 1: You must update the APT package repository cache before attempting to install, update, or remove any packages. Update the APT database to download new packages from Ubuntu. Launching the terminal and entering the following Linux command:

sudo apt-get -y update

Step 2: Start the package installation on Ubuntu 22.04. After updating the system, you can install art-nextgen-simulation-tools Ubuntu by pasting this command into the terminal and executing it.

sudo apt-get install art-nextgen-simulation-tools

Install art-nextgen-simulation-tools using Aptitude

Users can manage their installation, upgrade, and removal of packages with Aptitude and view a list of the packages that are currently available. You must run this command to install it if you haven’t already done so on Ubuntu.

sudo apt-get install aptitude

After that, you can now install art-nextgen-simulation-tools, just following these steps:

Step 1: Update the APT database to download new packages from Ubuntu. Launching the terminal and entering the following Linux command:

sudo apt -y update

Step 2: Start installing the packages on Ubuntu 22.04. You can now install art-nextgen-simulation-tools Ubuntu by executing this command in the terminal.

sudo aptitude -y install art-nextgen-simulation-tools

Uninstall art-nextgen-simulation-tools on Ubuntu 22.04

Have you ever thought that uninstalling an application from Ubuntu is difficult? You are mistaken; Anyone can easily uninstall any program, not just art-nextgen-simulation-tools.

If you installed art-nextgen-simulation-tools using APT or Aptitude, you could uninstall art-nextgen-simulation-tools on Ubuntu by following this step:

sudo apt remove --auto-remove art-nextgen-simulation-tools

If you want to uninstall art-nextgen-simulation-tools and delete its data and dependencies, you can also run the following command:

sudo apt autoremove --purge art-nextgen-simulation-tools

Ending

In this tutorial, I showed you ways to install art-nextgen-simulation-tools on Ubuntu 22.04 and ways to uninstall art-nextgen-simulation-tools too. Please do not hesitate to contact me if you require any assistance. I’m delighted to respond to them.